Environmental Project  no. 567, 2000

Development of a Nordic system for measuring the inactivation of pathogens during composting

Contents

Preface
   
Summary
   
Danish Summary, Sammendrag på dansk
  
Introduction
  
2 Indicator organisms for human and animal pathogens
2.1 Purpose
2.2 Materials and Methods
2.2.1 Origin of samples
2.2.2 Production of inoculum cultures
2.2.3 Evaluation of the recovery efficiency
2.2.4 Resistance of inoculated strains under standard conditions
2.2.5 Analytic methods
2.3 Results
2.3.1 Recovery of the inoculum added to the raw materials
2.3.2 Resistance of inoculated strains under standard conditions
2.3.3 Comparison of results obtained with different methods
2.4 Discussion
2.4.1 Recovery of the inoculated organisms from the raw materials
2.4.2 Resistance of inoculated strains under standard conditions
2.4.3 Comparison of results obtained with different methods
2.5 Recommendations for the full-scale investigation
  
3 Indicator organisms for plant pathogens
3.1 Purpose
3.2 Materials and Methods
3.2.1 Plasmodiophora brassicae
3.2.2 Rhizoctonia solani
3.2.3 Fusarium oxysporum
3.2.4 Tobacco mosaic virus
3.3 Results
3.3.1 Plasmodiophora brassicae
3.3.2 Rhizoctonia solani
3.3.3 Fusarium oxysporum
3.3.4 Tobacco mosaic virus
3.4 Discussion
3.4.1 Plasmodiophora brassicae
3.4.2 Rhizoctonia solani
3.4.3 Fusarium oxysporum
3.4.4 Tobacco mosaic virus
3.5 Recommendations for the full-scale investigation
3.5.1 Plasmodiophora brassicae
3.5.2 Rhizoctonia solani
3.5.3 Fusarium oxysporum
3.5.4 Tobacco mosaic virus
  

4 References

Preface

This report presents the results of a study initiated to prepare a full-scale investigation for evaluating the inactivation of pathogens during composting of biodegradable waste, initiated by the Nordic Council of Ministers. The study was a collaboration between:
SOLUM AS/Dansk Jordforbedring ApS (Kasper Kjellberg Christensen and Morten Brøgger)
Department of Plant Biology, Plant Pathology Section, The Royal Veterinary and Agricultural University of Denmark (Kaare Møller and John Hockenhull)
Department of Plant Biology, The Biotechnology group, The Danish Institute of Agricultural Sciences at The Royal Veterinary and Agricultural University of Denmark (Elisabeth Johansen and Merete Albrechtsen)
The Swedish Association of Waste Management (Elisabeth Kron)

The practical project period extended from November to December 1999 with reporting in January and February 2000. The project was co-ordinated by SOLUM AS. The report is divided in two separate sections, one dealing with indicator organisms for human and animal pathogens (prepared by K.K. Christensen) and one dealing with the plant pathogens Plasmodiophora brassicae, Rhizoctonia solani, Fusarium oxysporum (K. Møller and J. Hockenhull), and tobacco mosaic virus (M. Albrechtsen and E. Johansen).

Summary

This report presents the results of a study initiated to prepare a full-scale investigation for evaluating the inactivation of pathogens during composting of biodegradable waste by means of a direct process evaluation. In the direct process evaluation, the process is analysed by inoculating the raw material with selected pathogens or indicator organisms in bags. After a sanitary composting phase (typically 2-4 weeks), the bags are collected and analysed for the survival of the inoculated organisms.

The main preparations needed before the direct process evaluation is initiating, includes
Production or collection of the inoculum organisms Escherichia coli, Streptococcus faecalis, Plasmodiophora brassicae, Rhizoctonia solani, Fusarium oxysporum, and tobacco mosaic virus.
Evaluation of methods applied for identification of the organisms.
Evaluation of the survival of the organisms for 4 weeks under standard conditions.

The indicator organisms for human and animal pathogens, Escherichia coli and Streptococcus faecalis, were propagated from commercially available strains to culture concentrations between 107 and 109 bacteria per mL. By inoculating the raw materials with 10-mL culture per 100-g waste, suitable concentrations of the inoculated organisms were obtained for the direct process evaluation. This was indicated by a germ concentration in the raw materials totally dominated by the inoculated organisms. Generally, good agreement was found between the germ concentration added to the raw materials and the measured concentrations when using the methods published by the Nordic Committee on Food Analysis (NMKL). Poor survival of the inoculated organisms was found when incubating the raw material in humid sand at 20° C for 4 weeks. The poor survival of the organisms may be a consequence of a relatively dry environment in the sand compared to the raw materials. It is therefore recommended to incubate in media with higher water-holding capacity when performing the full-scale control incubations.

The plant pathogens R. solani and F. oxysporum were propagated on wheat seeds, tobacco mosaic virus was propagated on tobacco plants and P. brassicae was collected in an infected red cabbage field. For all organisms biotests were developed for identification of the pathogens. P. brassicae was identified on mustard (Brassica juncea), R. solani on bean (Phaseolus vulgaris), F. oxysporum on tomato (Lycopersicon ecculentum), and tobacco mosaic virus on tobacco plants (Nicotiana tabacum). The concentrations of the pathogens were for all biotests quantified visually by various indexes. In addition to these indexes, commercially ELISA kits were evaluated for quantification of R. solani and tobacco mosaic virus. All the plant pathogens survived the 4-week incubation period under standard conditions in sand without problems.

On the basis of the presented preparation study, it is recommended to include the direct process evaluation in the Nordic full-scale investigation for evaluating the sanitary aspects of composting biodegradable waste.

Sammendrag på dansk

I denne rapport præsenteres resultaterne af en undersøgelse, som er iværksat for at forberede en fuldskala-undersøgelse til at evaluere inaktivering af patogener ved kompostering af bionedbrydeligt affald ved hjælp af en direkte procesevaluering. I den direkte procesevaluering analyseres processen ved at pode råmaterialet med udvalgte patogener eller indikatororganismer i sække. Efter en sanitær komposteringsfase på typisk 2-4 uger indsamles sækkene og analyseres for overlevelsen af de indpodede organismer.

De nødvendige forberedelser, før en direkte procesevaluering kan påbegyndes, inkluderer
Produktion eller indsamling af pode-organismerne Escherichia coli, Streptococcus faecalis, Plasmodiophora brassicae, Rhizoctonia solani, Fusarium oxysporum og tobakmosaikvirus.
Evaluering af metoder der skal anvendes til identifikation af organismerne.
Evaluering af overlevelsen af organismerne i 4 uger under standardbetingelser.

Indikator-organismerne for human- og veterinærpatogener, Escherichia coli og Streptococcus faecalis, blev opformeret fra kommercielt tilgængelige stammer til kulturkoncentrationer på mellem 107 til 109 bakterier per mL. Ved at pode råmaterialerne med 10 mL kultur per 100 g affald blev passende koncentrationer af de podede organismer opnået, for den direkte procesevaluering. Dette var indikeret ved, at kimkoncentrationen i råmaterialerne var totalt domineret af de indpodede organismer. Ved anvendelse af metoderne publiceret af Nordisk Metodikkomite for Levnedsmidler (NMKL) blev der generelt fundet god overensstemmelse mellem kimkoncentrationen tilført råmaterialerne og de målte koncentrationer. Der blev fundet lille overlevelse af organismer indpodet i råmateriale opbevaret i fugtigt sand ved 20° C i 4 uger. Den dårlige overlevelse var givetvis en konsekvens af det relativt tørre miljø i sandet sammenlignet med råmaterialerne. Ved udførelse af fuldskalaundersøgelsen anbefales det derfor at anvende et inkubationsmedium med højere vandindhold til kontrolinkubationerne.

Plantepatogenerne R. solani og F. oxysporum blev opformeret på hvede, tobakmosaikvirus blev opformeret på tobaksplanter og P. brassicae blev indsamlet i en inficeret kålmark. For alle organismer blev biotests udviklet til identifikation af patogenerne. P. brassicae blev identificeret på sennep (Brassica juncea), R. solani på bønne (Phaseolus vulgaris), F. oxysporum på tomat (Lycopersicon ecculentum) og tobakmosaikvirus på tobaksplanter (Nicotiana tabacum). Koncentrationen af patogenerne blev i alle biotests kvantificeret visuelt vha. forskellige indeksmetoder. Foruden disse indeksmetoder, blev kommercielle ELISA-kits til kvantificering af R. solani og tobakmosaikvirus evalueret. Alle plantepatogener overlevede den 4 ugers inkubationsperiode ved standardbetingelser i sand uden problemer.

Med baggrund i det præsenterede forstudie, anbefales det at inkludere den direkte procesevaluering i den Nordiske fuldskala-undersøgelse til evaluering at de sanitære aspekter ved kompostering af bionedbrydeligt affald.

1. Introduction

In 1999 the Nordic Council of Ministers initiated an investigation with the purpose to clarify how the sanitary aspects of composting garden, sludge and household waste can be described and controlled optimally under Nordic conditions (Christensen et al., 2000). In this investigation it was recommended to perform a full-scale investigation of the sanitary conditions at typically Nordic composting plants, to obtain results there can be used for optimising the present legislation’s and promote the sanitary safe use of compost. The described full-scale investigation includes microbiological analyses of the waste at different stages during the composting process (spot test analysis) as well as an indirect process supervision where physical and chemical parameters such as temperature, humidity and pH are registered. In addition, the inactivation of pathogens is investigated by means of a direct process evaluation. In this process, the raw material is inoculated in different points of the heap with selected pathogens in bags. After a sanitary composting phase (typically 2-4 weeks), the bags are collected and analysed for the survival of the inoculated pathogens. In Germany, this method is found suitable for the evaluation of pathogen reduction during the composting process.
In connection with the investigation performed for the Nordic Council of Ministers (Christensen et al., 2000), a hearing of Nordic experts was performed ensuring that the organisms included in the full-scale investigation are relevant for the Nordic environment. During this hearing, the experts suggested to inoculate with Escherichia coli and Streptococcus faecalis (indicator organisms for human and animal pathogens) and the plant pathogens Plasmodiophora brassicae, Rhizoctonia solani, Fusarium oxysporum and tobacco mosaic virus in the direct process evaluation. However, before the full-scale investigation is initiated, it is important that the analytic methods for the suggested indicator organisms are evaluated. In addition, control experiments are needed to evaluate the resistance of the chosen organisms under standard conditions for four weeks (the maximal duration of the sanitary phase). In Germany, experiences are available with the visual evaluation of biotests for tobacco mosaic virus and Plasmodiophora brassicae (Kehres & Pohle, 1998). However, the Nordic experts stressed that the survival of the inoculated plant pathogens also should be evaluated with a complementary microbiological technique (e.g. ELISA) when possible.
To ensure that the full-scale investigation can be initiated as soon as possible, The Danish Environmental Protection Agency therefore decided to support the present preparation study for the full-scale investigation in November 1999. The report is divided in two separate sections, one dealing with indicator organisms for human and animal pathogens and one dealing with plant pathogens. Each section ends up with recommendations for the full-scale investigation.

2. Indicator organisms for human and animal pathogens

2.1 Purpose
2.2 Materials and Methods
2.2.1 Origin of samples
2.2.2 Production of inoculum cultures
2.2.3 Evaluation of the recovery efficiency
2.2.4 Resistance of inoculated strains under standard conditions
2.2.5 Analytic methods
2.3 Results
2.3.1 Recovery of the inoculum added to the raw materials
2.3.2 Resistance of inoculated strains under standard conditions
2.3.3 Comparison of results obtained with different methods
2.4 Discussion
2.4.1 Recovery of the inoculated organisms from the raw materials
2.4.2 Resistance of inoculated strains under standard conditions
2.4.3 Comparison of results obtained with different methods
2.5 Recommendations for the full-scale investigation

2.1 Purpose

The purpose of this part of the investigation was to:

  1. Check that the inoculum added to the raw material can be recovered by the applied analytic methods.
  2. Investigate the resistance of the inoculated organisms under standard conditions.
  3. Compare results obtained with different methods (NMKL and DS methods).

2.2 Materials and Methods

2.2.1 Origin of samples

In the full-scale investigation, composting of three raw materials are investigated: Yard waste, sewage sludge, and household waste. Therefore, the behaviour of the inoculated organisms was analysed in the different types of raw materials.

Shredded yard waste was obtained from a composting plant at Dragør, Copenhagen. Also, the raw material prepared for composting of sewage sludge was obtained at Dragør, which consisted of a mixture of sewage sludge (40%) and shredded yard waste (60%). The raw material prepared for composting of household waste was sampled at AFAV, Frederikssunds. This material consisted of household waste (mixed with 6% paper) treated by a 2-3 day drum pre-composting process mixed in a 1:1 ratio with shredded yard waste from Dragør. For each type of raw material, three composite samples were taken representing different places of the heap.

2.2.2 Production of inoculum cultures

Inoculum cultures of E. coli (strain no. 228) and S. faecalis (strain no. 122) were produced from commercial strains available at VDL (Veterinær Direktoratets Laboratorium, Denmark). The inoculum’s were produced by culturing the strains in a Tryptone Soya Broth (OXOID CM 129) at 37° C for 24 hours. This procedure resulted in a germ concentration of E. coli at 2.7±0.3· 108 to 2.6±0.5· 109 per mL (mean±SD, n = 3) and for S. faecalis the concentration was 3.3±0.2 · 107 to 9.7±4.0 · 107 per mL (n = 3).

2.2.3 Evaluation of the recovery efficiency

The concentrations of E. coli and enterococci were investigated in control samples of 100 g raw material (n = 3 for each raw material) mixed with 10 mL distilled water. Samples inoculated with E. coli and S. faecalis were prepared by mixing 100 g raw material (n = 3) with 10 mL of the prepared E. coli and S. faecalis inoculum cultures, respectively. Thereafter, the concentrations of E. coli were determined in samples inoculated with E. coli and the concentrations of enterococci (fecal streptococcus) were determined in samples inoculated with S. faecalis.

2.2.4 Resistance of inoculated strains under standard conditions

For each type of raw material, 3 samples inoculated with E. coli and 3 samples inoculated with S. faecalis were produced. The samples were produced by mixing 200 g of the raw material with 20 mL of the inoculum cultures. Thereafter, the inoculated samples were transferred to nylon bags and incubated in sterilised wet (water content = 5 weight %) sand at 20° C for four weeks. This procedure is used in Germany to check the viability of Salmonella during the test period (Bioabfallverordnung, 1998). After the incubation period, the concentrations of E. coli were determined in samples inoculated with E. coli and the concentrations of enterococci were determined in samples inoculated with S. faecalis.

2.2.5 Analytic methods

E. coli was determined according to the procedure given by the Nordic Committee on Food Analysis (NMKL) no. 125 (1996). In this method, E. coli is defined as thermotolerant coliform bacteria, which in the IMViC test give the reaction ++--. Thermotolerant coliform bacteria are bacteria growing on violet red bile agar at 44° C in 24 hours. Some of the samples were also analysed for E. coli according to NMKL 147 (1993) using the Petrifilmä Plate method to compare the results obtained by these two methods. For both methods, the mean bacteria flora was determined in the solid material according to the pre-treatment procedure given in NMKL 91 (1988).

S. faecalis was determined as enterococci (fecal streptococcus) according to NMKL 68 (1992) after extraction of the bacteria from the solid material by NMKL 91 (1988). In this method, enterococci is defined as bacteria growing in media containing 6.5% NaCl, at pH 9.6 at 45° C and do not produce catalase.

For three samples composed of sewage sludge, parallel analyses were performed for enterococci according to the procedure given by The Danish Standards Association (DS 2401, 1999).

2.3 Results

2.3.1 Recovery of the inoculum added to the raw materials

The concentrations of E. coli in the raw materials were very low compared to the amount of E. coli added with the inoculum cultures (Fig. 1). Thus, the raw materials contained 104-105 bacteria g-1 and constituted thereby below 1‰ of the amount of bacteria added with the inoculum culture (2.7±0.3 · 108 g-1, mean ± SD, n = 3). The concentrations of E. coli measured in the inoculated raw materials (~2.5 · 107 g-1) were significantly lower (P < 0.001) than the amount of bacteria added with the inoculum. However, the effect of the inoculum procedure was pronounced which was indicated by an increase in the E. coli concentrations in the raw materials by a factor 1000.

The concentrations of enterococci in the raw materials were also low compared to the

Figure 1.
The concentration of E. coli in the raw materials and the amount of E. coli added to the raw materials with the inoculum culture are shown in left stacked bars. The concentration of E. coli measured in samples of the raw materials inoculated with the E. coli culture are shown in the right bars. Results are shown for yard, sludge, and household waste. Data are means ± SD of three samples. Values with different letters are significantly different (P < 0.05, two-tailed t-test). Notice the E. coli concentration is plotted on a logarithmic scale, indicating that the amount of E. coli in the raw material was less that 1‰ of the amount added with the inoculum culture.

Figure 2.
The concentration of enterococci in the raw materials and the amount of Streptococcus faecalis added to the raw materials with the inoculum culture are shown in the left stacked bars. The concentration of enterococci measured in samples of the raw materials inoculated with the Streptococcus faecalis culture are shown in the right bars. Results are shown for yard, sludge, and household waste. Data are means ± SD of three samples. Values with different letters are significantly different (P < 0.05, two-tailed t-test). Notice the enterococci concentration is plotted on a logarithmic scale, indicating that the amount of enterococci in the raw material was less that 1‰ of the amount added with the inoculum culture.

amount of S. faecalis added with the inoculum culture (Fig. 2). The concentrations of enterococci in the raw materials were between
104-105 g-1 and the amount of bacteria added with the inoculum procedure was ~108 g-1. There were no significant differences in the enterococci concentrations of the inoculated raw materials and the theoretical concentrations calculated from the concentrations in the raw materials and the amount of bacteria added with the 10-mL inoculum culture.

2.3.2 Resistance of inoculated strains under standard conditions

For E. coli, the raw materials were inoculated with 2.6± 0.5 · 109 colony forming units (CFU) g-1 (Fig. 3). After the 4 weeks incubation period at 20° C in wet sand, the concentrations of E. coli were higher in treatments inoculated with E. coli compared to control treatments of the raw material without inoculation. However, the concentrations of E. coli after the incubation period were low compared to the amount of bacteria added. Thus, the concentrations of E. coli in inoculated samples were 1.4± 0.9 · 105, 8.2± 2.3 · 105, and 1.1± 0.6 · 105 CFU g-1 for raw materials based on yard, sludge and household waste, respectively.

The concentration of S. faecalis in the inoculum culture was lower than for E. coli, resulting

Figure 3.
The amount of E. coli added with the inoculum culture (Ino.) and the concentration of E. coli in the raw materials after the 4 weeks incubation period for samples with and without addition of inoculum culture. Results are shown for yard, sludge, and household waste. Data are means ± SD of three samples. Notice the E. coli concentration is plotted on a logarithmic scale.

Figure 4.
The amount of enterococci added with the inoculum culture (Ino.) and the concentration of enterococci in the raw materials after the 4 weeks incubation period for samples with and without addition of inoculum culture. Results are shown for yard, sludge, and household waste. Data are means ± SD of three samples. Notice the enterococci concentration is plotted on a logarithmic scale.

in a lower inoculum concentration of 3.3± 0.2 · 107 CFU g-1 (Fig. 4). After the incubation period, the concentration was reduced in all treatments, and for raw materials based on sludge and household waste there were no significant differences between treatments with or without inoculation. For yard waste without inoculation, the concentration was below the detection limit (10 CFU g-1) after the incubation period whereas inoculated samples showed a concentration of 3± 2 · 102 CFU g-1.

2.3.3 Comparison of results obtained with different methods

Generally there was good agreement between the results obtained for E. coli with NMKL 125 and NMKL 147. However, for concentrations below 105 CFU g-1 the NMKL 147 method resulted in lower concentrations than expected from the results obtained with NMKL 125 (Fig. 5).

Three samples composed of raw material based on sludge were analysed for enterococci according to NMKL 68 (1992) and DS 2401 (1999). For these samples, the concentration obtained with the DS method (2.5± 0.6 · 104 CFU g-1) was significantly lower (P < 0.01, two-tailed t-test) than the results obtained with the NMKL method (1.1± 0.2 · 105 CFU g-1).

2.4 Discussion

The advantage of the direct process evaluation is the access to evaluate the inactivation of

Figure 5.
The concentrations of E. coli measured according to the NMKL 147 (1993) method as a function of the results obtained by the NMKL 125 (1996) method for identical samples. The line represents the function where the results obtained by the two methods are identical.

defined inoculated organisms during the composting process. Thereby it will be possible to compare the sanitary efficiency of different composting concepts/plants independent on the composition of the waste. However, before initiating a direct process evaluation it is essential to ensure that the inoculum added to the raw materials can be analysed with the applied methods and to know the resistance of the chosen organisms under standard conditions.

2.4.1 Recovery of the inoculated organisms from the raw materials

The purpose with the inoculation of the raw materials with E. coli and S. faecalis is to create an environment dominated by the inoculated organisms in a concentration there allow to investigate their inactivation during the composting process. Inoculation with 10-mL culture per 100-g raw material resulted in an environment totally dominated by the inoculated organisms for both E. coli and S. faecalis/enterococci. At the same time, the concentrations of the inoculated organisms were 108 or higher allowing the measurement of a log 6-7 reduction of the inoculated organisms. For S. faecalis, there was good agreement between the amount of germs added to the raw materials and the amount retrieved. However, for E. coli the recovery of the inoculated organisms were less efficient, since the amount of E. coli measured in the inoculated raw materials were about 1 log unit lower than the amount added. An explanation for this observation could be an inhomogeneous distribution of the bacteria in the raw material resulting in a lower number of colony forming units than the actual number of bacteria present in the material. Other explanations could be that the extraction procedure (NMKL 91, 1988) did not extracted all bacteria form the raw materials or some of the bacteria were inactivated after they were applied to the raw materials. Thus, when evaluating the reduction of E. coli in the direct process evaluation, it will be necessary to know the actual measured inoculum concentration and not the calculated concentration based on the germ concentration in the inoculum.

2.4.2 Resistance of inoculated strains under standard conditions

In Germany, Salmonella senftenberg W775 is used as indicator organism for human and veterinary sanitation in the direct process evaluation. The demand to the process is that no viable salmonellae can be found, in any of the inoculated samples, and controls samples have to confirm the viability of the bacteria during the test period (Bioabfallverordnung, 1998). However, the analysis for salmonellae is qualitative and the results are therefore only given as Salmonella present or not present. The demand to the control samples incubated under standard conditions, confirming the viability of the bacteria during the test period, is therefore fulfilled if the concentration of Salmonella stays above the detection limit.

In the proposed Nordic investigation, E. coli and S. faecalis/enterococci were considered to have several advantages relative to Salmonella as indicator organisms in a direct process evaluation (Christensen et al., 2000). One of these advantages is that these organisms are easier to quantify allowing for a more differentiated interpretation of the results. In the Nordic full-scale investigation it will thus be possible to evaluate how efficient the inactivation of the inoculated organism is relative to control samples.

The content of E. coli and S. faecalis in control samples, composed of the raw materials inoculated with the bacteria cultures, were for all samples above the detection limit after the incubation period (Fig. 3 and 4). However, compared to the amount of bacteria added with the inoculum cultures, the concentrations of E. coli and S. faecalis were low. Thus, the environment in the control samples must have stressed the bacteria. The measured reduction is unfavourable, since the inactivation during the composting process must be related to the control samples. If a considerable inactivation in the control samples is observed under standard conditions, it will therefore be difficult to measure any reduction during the composting process, relative to the control samples.

During the 4 weeks incubation period, the inoculated control samples were stored in wet sand at 20° C. On the surface, these conditions seems to be good for the microbial population. However, a clear problem with sand as a storage medium, is that the water-holding capacity is low. Thus, the content of water in the relatively wet sand used during the incubation period was only 5%. In contrast, the water content of the raw materials for composting is typically between 50 and 60%. During the incubation period, an equilibrium in the water content was very likely established between the sand and the raw materials resulting in drying of the raw materials. This mechanism was probably the consequence for the inactivation of the inoculated bacteria, and it is therefore recommended to use an incubation media with a higher water-holding capacity than sand. To avoid drying, the water content of the incubation media must be adjusted so it is similar to the water content of the raw materials.

2.4.3 Comparison of results obtained with different methods

For the enterococci analysis, the good agreement between the calculated and the measured concentrations in the raw materials inoculated with S. faecalis supported that the NMKL 68 (1992) is useably for the investigated samples. However, for raw materials based on sludge the NMKL method resulted in higher concentrations than the DS method. This study can not evaluate the quality of the NMKL method relative to the DS method. However, the study stresses that it is very important that the same method is used in all countries participating in the full-scale investigation if it shall be possible to compare the results.

In the analysis for E. coli, there was generally good agreement between the results obtained with the two methods used. However, at concentrations below 105 CFU g-1, the NMKL 147 (1993) method resulted in lower concentrations than NMKL 125 (1996). Again, this study can not evaluate the quality of the used methods. However, as stated in the NMKL 125 (1996) procedure, this method is especially suitable for detection of stressed or sub-lethally injured bacteria, and this might be the reason for the higher concentrations observed at low concentrations.

Since the full-scale investigation is a Nordic project, it is important that the used methods are available in all the participating countries. In addition, the above mentioned considerations supports that NMKL 68 (1992) is used for analysis of enterococci and NMKL 125 (1996) is used for analysis of E. coli.

2.5 Recommendations for the full-scale investigation

To check the quality of the inoculum culture, parallel samples of the inoculated raw materials are taken at the beginning of the incubation period.
To evaluate the viability of the inoculum culture, parallel samples of the inoculated raw materials are incubated under control conditions.
To avoid drying during the incubation period, the control samples must be stored under oxidised conditions in an incubation medium with a water content similar to the water content in the raw materials.
E. coli is analysed according to NMKL 125 (1996).
Enterococcus is analysed according to NMKL 68 (1992).

3. Indicator organisms for plant pathogens

3.1 Purpose
3.2 Materials and Methods
3.2.1 Plasmodiophora brassicae
3.2.2 Rhizoctonia solani
3.2.3 Fusarium oxysporum
3.2.4 Tobacco mosaic virus
3.3 Results
3.3.1 Plasmodiophora brassicae
3.3.2 Rhizoctonia solani
3.3.3 Fusarium oxysporum
3.3.4 Tobacco mosaic virus
3.4 Discussion
3.4.1 Plasmodiophora brassicae
3.4.2 Rhizoctonia solani
3.4.3 Fusarium oxysporum
3.4.4 Tobacco mosaic virus
3.5 Recommendations for the full-scale investigation
3.5.1 Plasmodiophora brassicae
3.5.2 Rhizoctonia solani
3.5.3 Fusarium oxysporum
3.5.4 Tobacco mosaic virus

3.1 Purpose

The purpose of this part of the investigation was to:

  1. Collect or produce material infected with the pathogens Plasmodiophora brassicae, Fusarium oxysporum, Rhizoctonia solani, and tobacco mosaic virus for the direct process evaluation.
  2. Survey the possibility for complementary microbiological techniques (ELISA) in the evaluation of biotests
  3. Perform biotests with the selected pathogens and compared results obtained visually and with ELISA techniques.
  4. Investigate the resistance of the organisms under standard conditions.

3.2 Materials and Methods

3.2.1 Plasmodiophora brassicae

3.2.1.1 Inoculum procurement

Inoculum were collected in a red cabbage field in December 1999 at a farm in the vicinity of Skælskør. Infested soil and gall material was air-dried for about 10 days, soil and gall material was ground with mortar and pestle and passed through a 10 x 10 mm mesh.

3.2.1.2 Growth media

The inoculum (30 g gall material and 430 g infested soil) was mixed with a sand-clay-peat mixture, using 30% sand (volume) and 70% Weibull enhetsjord (K-jord) clay-peat (20%:80% by volume) mixture, amended with N, P, K and trace elements by the manufacturer (Weibull Trädgård AB, Box 520, 261 24 Landskrona, Sweden). A sufficiently low pH (£ 6.0) was obtained by mixing the inoculum with approximately 550-mL of sand-clay-peat mixture in the specified ratio.

3.2.1.3 Greenhouse conditions

In all biotests for P. brassicae, incubation of treated plants took place in the greenhouse with 16 h light at 24° C alternating with 8 h darkness at 17?C. A liquid fertiliser (Hornum Næring, P. Brøste A/S, Lyngby, Denmark) was used for maintenance of plants at a rate of 20 mL fertiliser in 4 L water.

3.2.1.4 Bait material for biotests

Based on the guidelines formulated in Kehres & Pohle (1998) the mustard cultivar ‘Vittasso’ of Brassica juncea (L.) Czernj. et Cosson was chosen for the biotests.

3.2.1.5 Preliminary biotests

A five step soil dilution series (dilution factor 2) was prepared in three replications, using an inoculum level of 30 g club-root material and 430 g infested air-dried soil at the first dilution step in a mixture with 200 g sterile sand and 550 mL sand-clay-peat mixture. This composition yielded a mixture having a satisfactory low pH (< 6). In subsequent dilution’s, inoculum volumes were replaced with equal volumes of sand-clay-peat mixture. Hence, the dilution steps contained 1, 0.5, 0.25, 0.125 and 0.0625 times of the basic inoculum mixture (30 g club-root material and 430 g infested soil). The samples were placed in 2-L pots (13-cm diameter). 16 seeds of B. juncea, cultivar Vitasso, were sown in each pot, water was supplied (300-500 mL per pot) and pots were packed in polyethylene bags, in order to avoid cross-infections between pots. Extra seeds of B. juncea were germinated on moist blotter, and after one week, seedlings were transplanted to pots in which seeds had not germinated in order to assure a total of 16 plants per pot. A pathogen free control pot in which the inoculum volume was replaced by sand-clay-peat mixture was sown, and all pots were then incubated in the greenhouse.

The B. juncea seedlings were observed frequently, and since pronounced club-root formation was seen after 14 days of incubation results were scored at this time, recording plants as either club-rooted or not. Root samples without evident symptoms were selected at random, prepared as whole mounts in water and examined at magnifications of 10 x 10 - 40 in light microscopy.

3.2.1.6 Moist sand incubation of samples and biotesting pathogen survival

Club-root development over time. Twenty-two samples were prepared (30 g club-root material, 430 g infested soil, 200 g sterile sand (autoclaved twice at 121?C, 1.5 atm. for 1 h at a 24 h interval), wrapped in polypropylene fibre tissue (Windhager ‘Garten-Vlies’) and buried in moist, sterile sand (moisture content 20-25%) in a polyethylene sealed tray. The samples were incubated for 28 days at room temperature and then 18 samples were transferred to 2-L 13-cm diameter pots after mixing each sample with 550-mL sand-clay-peat mixture. 16 pre-germinated seedlings (7 days old) were transplanted to each pot. Three replicate pathogen free pots (16 plants per pot) were produced as described above for control. Disease was scored in sets of three replicate (treated) pots after 18, 28, 35 and 42 days of incubation. Roots of symptomless plants were subjected to microscopy as described above.

Soil dilution series. Combining two samples, the remaining four samples were used to make two replicate soil dilution series, the initial dilution step representing one sample, and the following, as above 0.5, 0.25, 0.125 and 0.0625 times the full sample dosis. Sixteen mustard seedlings (one week old) were transplanted to each pot. Three inoculum free pots were planted with 16 plants in each to serve as reference. Disease scoring took place after a full 6-week incubation period in the greenhouse.

Disease scoring for the two above assays was made using a four step disease index, modified after Buczacki et al. (1975), in which 0 = no visible root swelling, 1 = symptomless roots but plasmodia present / slight root swellings, 2 = moderate and 3 = large root swellings. Unlike the index suggested by Buczacki et al. (1975), the applied index did not consider whether lateral and / or taproots were infected, since swellings were consistently associated with the taproot. Further, the results of the study of club-root development over time were analysed as discrete data in ordered response categories by logistic regression in SAS System 6.12.

3.2.2 Rhizoctonia solani

3.2.2.1 Inoculum production and moist sand incubation of samples

A Danish isolate, accession number 2041, of Rhizoctonia solani, AG1, which has proven pathogenic to bean (Phaseolus vulgaris) was propagated on wheat kernels to form the amount of inoculum (10 kg) required for the pilot and full-scale investigations. Wheat seed in 2-L Erlenmeyr flasks, 750 g in each, was mixed with 625-mL water per flask and twice autoclaved for 60 minutes at a 24 h interval. The content of each flask was inoculated with 50 mL of a homogenate of 700 mL water and 10 5-day-old colonies of R. solani on potato dextrose agar (1.5% PDA, Difco in 90 mm Petri dishes). A 14 days incubation period at 20?C followed, after which 25 samples, each equivalent to 30 g dry seed, were wrapped in polypropylene fibre tissue (Windhager ‘Garten-Vlies’) and incubated for 28 days at room temperature in moist sterile sand (20-25% moisture by weight). The surplus inoculum was air dried in open trays in a laminar flow bench at 20?C, until a weight of less than 2 kg per bag had been reached - about 5 days were required. The inoculum thus produced was again transferred to sterile autoclave bags, which were heat sealed and stored at 4?C.

3.2.2.2 Test of pathogen survival of moist sand incubation

Survival of the pathogen was tested by plating a few wheat seeds from each of the incubated samples on 1.5% water agar and incubating for 2-3 days, after which observations were made in low-power light microscopy for the characteristic mycelium and anastomoses of R. solani.

3.2.2.3 Biotests

A preliminary soil dilution test (three replications) was carried out under the same temperature and light conditions as applied for the P. brassicae tests (dilution factor 2, 5 steps, initial dosis 30 g) in order to check the potential of the produced inoculum. A single, inoculum free pot was sown for reference.

Further, in the same design, triplicate soil dilution series (initial dose 3 g per pot, dilutions 1, 0.2 and 0.1) were incubated in the light / darkness conditions described in 3.2.1.3, in low, medium and high temperature regimes (day / night: 15 / 17; 17 / 24 and 25 / 28?C) to test in which regime the biotest would perform the best. Triplicate inoculum free pots were sown for reference in all temperature regimes.

The dwarf bean (Phaseolus vulgaris) variety ‘BonBon’ was used as bait plant. In the preliminary test the sowing rate was 16 seeds, and in the soil dilution series test 20 seeds, per pot (1-L, 13 x 11.5 cm rectangular pots). The growth medium was a 30% sand : 70% clay-peat mixture, and the sown seed was covered with a mixture of the basic sand-clay-peat medium and the amount of inoculum required for the specific test performed.

The incubation period was three weeks in all tests. Plants were maintained using Hornum fertilizer. At the end of the three-week incubation period disease incidence was recorded. In the preliminary test a simple index was used, in which 0 = no symptoms, 1 = canker lesions present and 2 = seed rot, pre- and post-emergence damping-off. The soil dilution test involved an index in which 0 = no symptoms, 1 = small to medium size canker lesions on either hypocotyl or on root 2 = large size canker lesions on either hypocotyl or on root 3 = canker lesions on both hypocotyl and on root and 4 = seed rot, pre- and post-emergence damping-off. The data were analyzed by logistic regression in SAS System 6.12 (Proc Probit). The latter index was modified by pooling of neighbour categories as appropriate (See results).

3.2.2.4 ELISA test

A Rhizoctonia spp. specific ELISA kit, Agri-Screen, was purchased from Neogen Corporation, Lansing, UK. Segments of 2-cm length were cut from the root-hypocotyle transition of all plants in the soil dilution series incubated in the three temperature regimes.

The segments were bulked, weighed, and homogenised in test tubes with the extraction buffer (4 ml) provided in the kit, using an Ultra Thurax blender. Duplicate wells were filled with sample extract from each of the 35 pots from which plants could be harvested, out of a total of 36 pots involved in the experiment (no plants emerged in pot no. 36). A positive (pure, sterile R. solani extract) and a negative standard reference in single wells were included in the test. After this step, the procedure specified by Neogen was followed.

3.2.3 Fusarium oxysporum

3.2.3.1 Inoculum production

A Danish isolate, accession number 2065, of Fusarium oxysporum f.sp. lycopersici, race 0, which has proven pathogenic to tomato (Lycopersicon esculentum) was propagated in 6 kg wheat seed, according to the procedure as described for R. solani (inoculum per flask: 50 mL of a homogenate of 400 mL sterile water and 6 5-day-old F. oxysporum on PDA). At the end of the incubation 22 samples equivalent to 30 g dry seed each were wrapped in polypropylene fibre tissue and buried in moist sand (20-25% humidity by weight) for the four week incubation. The remainder inoculum was air dried and stored at 4?C for the full-scale investigation, as was the R. solani inoculum.

3.2.3.2 Test of pathogen survival of moist sand incubation

A few seeds from each incubated sample were plated on plain 1.5% water agar and incubated at 20?C for 2-3 days, followed by observations for Fusarium growth after 3-4 days.

3.2.3.3 Biotests

A sand(3):fine(1):medium(1) vermiculite mixture was used as growth medium. The susceptible tomato (Lycopersicon esculentum) variety ‘Harzfeuer’ was used as bait plant in the biotests. Dilution series of steps 1 (initial step 30 g inoculum), 0.2, 0.1, 0.025 and 0.01 were made in triplicate in three glasshouse temperature regimes, as applied for R. solani tests. Inoculum free pots were sown in triplicate for each temperature regime for reference.

Pots were inoculated by placing a 150 mL mixture of sand:vermiculite and inoculum as required on 500 mL of the basic sand:vermiculite mixture, and the inoculum layer was then covered by a 100 mL sand:vermiculite layer, in which 20 seeds were sown. Plants were maintained using Hornum fertilizer. Plants were incubated for 10 weeks.

3.2.4 Tobacco mosaic virus

3.2.4.1 Production of sample material

An isolate of tobacco mosaic virus was obtained from Department of Plant Protection, Danish Institute of Agricultural Sciences. This isolate was originally obtained from ATCC as isolate PV135. The virus was propagated in tobacco plants (Nicotiana tabacum var. Samsun or Wisconsin 38), where it spreads systemically. Plants at the four- to five-leaf stage were manually inoculated by applying sap from infected tobacco plants, diluted approx. 1:10 in inoculation buffer (4% polyethylene glycol 6000, 30 mM sodium phosphate pH 7.7), onto leaves previously dusted with carborundum as abrasive. Plants were grown under normal greenhouse conditions. Two to four weeks after inoculation, leaves showing mosaic-type symptoms were harvested and packaged in gauze.

3.2.4.2 Incubation in sand

Three samples each containing 10 g of infected tobacco leaves were placed in approx. 1 kg of wet sand each in plastic bags and incubated for 31 days at room temperature.

3.2.4.3 Evaluation of virus infectivity

After incubation, each sample (consisting of the leaf material and part of the gauze packaging to which it stuck) was placed in a mortar together with approx. 10-mL inoculation buffer and pounded with a pistle. The resulting slurry was inoculated to tobacco plants (Nicotiana tabacum var. Samsun or Xanthi-nc) as described above. Three Samsun plants and 1-5 Xanthi-nc plants at the three- to four-leaf stage were inoculated for each sample. Two leaves were inoculated on each plant. 12 days later the plants were visually inspected, and samples of inoculated (Xanthi-nc) or systemically infected (Samsun) leaves were analysed by ELISA

3.2.4.4 ELISA

0.25 g leaf material was homogenised in 2.5 mL 50 mM phosphate buffer pH 7.4 containing 140 mM NaCl and 0.1% Tween-20. The samples were analysed by the standard double-antibody sand with ELISA technique (Clark and Adams, 1977) using anti-tobacco mosaic virus reagents from BIOTEBA AG (Schweiz; Art. No. 190415 and 190425).

3.3 Results

3.3.1 Plasmodiophora brassicae

3.3.1.1 Preliminary biotests

Club-root symptoms developed within the 14 days of incubation in 167 of a total of 197 plants. Microscopy of roots randomly sampled from the 30 symptom free seedlings showed the presence of P. brassicae plasmodia in the taproot. A random variation of disease levels rather than a systematic relationship between these levels and the applied dilution steps was obvious in the three series (Table 1). There were no club-root symptoms in the control plants. Despite transplanting, the number of seedlings surviving at the end of the incubation period was less than 16 in many pots, due to poor plant establishment.

3.3.1.2 Moist sand incubation of samples and biotesting pathogen survival

Club-root development over time. Club-root symptoms were evident in the majority of mustard seedlings already after 14 days of incubation, and pathogen survival was verified for all twenty-two incubated test samples, since symptomatic plants were found in all pots, except for the control pots. While tap root swelling was consistently seen in all symptomatic plants, swelling of lateral roots was only found in some plants after 34 and 41 days of incubation.

Disease scoring was made in sets of three replicate pots on days 18, 27, 34 and 41 after transplantation, and showed a gradual increase in severity over time (from 2.04 to 2.88) as may be seen in Table 2. Odds-ratio analysis of the data revealed that only the disease level observed on the earliest date was significantly lower (P = 0.0001) than the disease level observed after 6 weeks of incubation, indicating that - at least at the very high inoculum level applied here - the biotest could be terminated earlier than the 6 weeks prescribed for the test.

All asymptomatic plants were subjected to histological examination. In 18 and 27 days old plants microscopy of tap roots as whole mounts was unproblematic, since the tap roots were almost fully transparent, while observations in older plant roots were less readily obtained, due to decreased transparency. For a number of plants scored to index level 1 infection was

Table 1.
Number of mustard plants (Brassica juncea, variety ‘Vitasso’) with club-root symptoms (Plasmodiophora brassicae) relative to total plant number in three replicate soil dilution biotests, following a 14 days incubation period in greenhouse.

Inoculum level

Dilution series (replicate no.)

1

2

3

1

11/12

5/7

8/8

0.5

13/13

7/14

13/14

0.25

15/16

12/16

6/14

0.125

15/16

10/12

14/14

0.0625

16/16

13/13

5/8

0 (Control)

0/16

-

-


Table 2.

Development of club-root disease (Plasmodiophora brassicae) severity in mustard seedlings (Brassica juncea) over time.

Days of incubation Replications

Number of plants at disease index level*

Total number
of plants per pot

Disease index**

0

1

2

3

18 Sample 1

0

6

4

5

5

1.93

  Sample 2

0

4

7

5

16

2.06

  Sample 3

0

5

4

7

16

2.13

27 Average

 

 

 

 

 

2.04

  Sample 4

1

3

2

8

14

2.21

  Sample 5

0

1

3

12

16

2.69

  Sample 6

0

0

1

15

16

2.94

  Average

 

 

 

 

 

2.61

34 Sample 7

0

1

2

13

16

2.75

  Sample 8

0

1

2

10

13

2.69

  Sample 9

0

0

1

10

11

2.91

  Average

 

 

 

 

 

2.78

41 Sample 10

0

0

2

9

11

2.82

  Sample 11

0

0

1

10

11

2.91

  Sample 12

0

0

1

9

10

2.90

  Average

 

 

 

 

 

2.88

*0 = no visible root swelling, 1 = symptomless roots but plasmodia present / slight root swellings, 2 = moderate and 3 = large root swellings.

**Disease index = ?(ni x i)/N, where i = numerical value of index group designation, ni = number of plants in corresponding index group i and N = total number of plants in pot.

only visible in microscopy. Histological examination revealed infections in all but a single of the asymptomatic seedlings (Table 2).

Soil dilution series. As in the preliminary tests the disease score results of the duplicate soil dilution series made from incubated samples revealed no difference in effect of different inoculum levels on the disease levels (Table 3).

Table 3. Development of club-root disease (Plasmodiophora brassicae) in mustard seedlings (Brassica juncea) inoculated at five inoculum levels (soil dilution factor 2) after 6 weeks of incubation. First dilution step = 30 g club-root material and 430 g infested soil.

Dilution
level
Replications

Number of plants at disease index level*

Total number
of plants per pot

Disease index**

0

1

2

3

1 Sample 1 0 0 3 10 13 2.77
  Sample 2 0 0 3 12 15 2.80
  Average           2.79
0.5 Sample 1 1 0 1 10 12 2.67
  Sample 2 4 1 3 3 11 1.45
  Average           2.01
0.25 Sample 1 0 0 0 14 14 3.00
  Sample 2 3 1 3 3 10 1.60
  Average           2.30
0.125 Sample 1 0 1 0 10 11 2.82
  Sample 2 0 1 5 6 12 2.42
  Average           2.62
0.0625 Sample 1 0 1 3 9 13 2.62
  Sample 2 0 0 4 11 15 2.73
  Average           2.68

*0 = no visible root swelling, 1 = symptomless roots but plasmodia present / slight root swellings, 2 = moderate and 3 = large root swellings.

**Disease index = ?(ni x i)/N, where i = numerical value of index group designation, ni = number of plants in corresponding index group i and N = total number of plants in pot.

3.3.2 Rhizoctonia solani

3.3.2.1Test of pathogen survival of moist sand incubation

After 2-3 days of incubation, characteristic growth of R. solani was observed in water agar platings of material from all incubated samples, and no contaminating organisms were observed in the plated material. Hence, the pathogen survived the incubation process without problems.

3.3.2.2 Biotests

Typical symptoms were ellipsoidal, sunken, red-brown to very dark cankers on root and hypocotyl. Mycelium was often found to proliferate over the hypocotyl. Epidermal reddish-brown fissures were extremely frequent in both treated and in reference pots, and it was found that the discolouration was due to necrotic epidermal tissue remnants suspended in the fissures. While R. solani often colonised such fissures, it was obviously not the cause of their formation. In any case of doubt, it was verified by stereomicroscopy that R. solani mycelium was present in lesions, before scoring a plant as infected.

In the preliminary test seed rot and pre- and post-emergence damping-off were pronounced at high inoculum levels. Since an extremely high incidence of seed rot and pre- and post-emergence damping-off was observed at the highest inoculum level in the preliminary test it was suspected that phytotoxic metabolites produced by the pathogen were responsible for the observed seed and seedling death. For that reason a special assay was designed to examine this, which confirmed the suspicion (data not presented). In consequence, the highest inoculum level in the soil dilution tests was reduced to 0.1 of that applied in the preliminary test, and the dilution scale widened considerably.

No disease was observed in the reference pot in the preliminary test, and as could be expected, in the statistical analysis all treatments were significantly different from the reference. When considering only comparisons between inoculum levels in treated pots in the statistical analysis, significant difference in disease incidence was only found for the comparison of the two extreme dilutions (P = 0.0014, level of significance 0.01).

In the soil dilution series tests, the index level 2 had a very low frequency, and it was most appropriate to pool this category with the higher level 3, obtaining thus a four-category index. Analysis showed that when corrections for overdispersal was made, there was no significant effect of replications or of temperature regimes, while all treatments significantly differed from the reference group. In this analysis there was no significant difference between treatments (inoculum levels).

Although no statistically significant effect of different temperature regimes was revealed, it was noted that plant emergence and disease development were better / more severe in the highest temperature regime, while disease frequency was slightly higher in the medium temperature regime than in other regimes.

3.3.2.3 ELISA

Evaluation of the finished test by naked eye clearly showed that wells holding reference plant extract compared well to the negative standard (light pale green), while most wells holding extract from treated plants stained strongly green (some stronger than the positive control), which compared well to the positive standard. Wells representing treatments showed a wide colour tone variation, however, which obviously was partly due to the variable amount of homogenate used as basis for extraction, and which could be possibly related to the inoculum level background.

3.3.3 Fusarium oxysporum

3.3.3.1 Test of pathogen survival of moist sand incubation

Survival of F. oxysporum was confirmed in all incubated samples since the pathogen emerged from all material plated on water agar.

3.3.3.2 Biotests

Specific chlorosis, epinasty and wilt symptoms started to appear after 10 weeks of incubation at all dilution steps, indicating a good sensitivity of the test, while reference plants appeared healthy. Reduction of plant emergence and height were obvious results of increasing inoculum levels. It was obvious that symptom development and disease severity increased with increased temperature. As for R. solani preliminary experiments were made, which showed that phytotoxic metabolites from the inoculum were capable of inhibiting plant emergence at the highest inoculum level (data not presented).

Due to the tardive development of symptoms, the results of the disease scoring cannot be presented in this report, since the scoring is presently being made.

3.3.4 Tobacco mosaic virus

3.3.4.1 Survival of tobacco mosaic virus i leaf samples incubated in sand

The tobacco variety Xanthi-nc carries the N gene providing hypersensitive resistance against tobacco mosaic virus. All leaves inoculated with sample extracts showed distinct local lesions within a week. At the time of scoring (day 12 after inoculation), all inoculated leaves contained numerous lesions, > 100 on all leaves except three, which were seriously damaged by the inoculation. All Samsun plants showed mosaic symptoms on younger leaves.

All leaf samples were strongly positive in ELISA. At the time of reading (80 minutes after substrate addition), all sample wells showed the maximum value (absorbance at 405 nm) of approx. 4.0 as did the positive control sample (a tobacco mosaic virus infected leaf sample from the greenhouse), while the uninfected control sample showed a value of 0.403. A small Xanthi-nc leaf sample comprising only three local lesions also showed the maximal Abs(405) value at 80 minutes.

3.4 Discussion

3.4.1 Plasmodiophora brassicae

In the perspective of testing the capacity of sanitation plants to reduce or eradicate P. brassicae from pure compost both the applied inoculum concentration (as prescribed according to German guidelines (Kehres & Pohle,1998)) and the quality of the sampled inoculum were considered adequate in terms of posing a challenge to the various sanitation plants selected for the full-scale project. The preliminary soil dilution biotests confirmed that the inoculum vigour was high, the inoculum giving rise to visible symptoms in more than 80% of the plants after only 14 days of incubation, and in the test of incubated samples all plants were infected after 18 days of incubation.

Although the assay was made as a five step soil dilution series, the dilution factor never reduced the inoculum level below the level of detection, nor did the lower levels reveal any reduction of levels of attack as compared to the maximum inoculum concentration level. The four week moist sand incubation period had no detectable effect on the vigour of the inoculum.

34.1.1 Serological detection methods

P. brassicae could be detected prior to symptom development in roots of B. juncea (‘Vitasso’) plants after three weeks of incubation in the above test system by serological methods (ELISA), as found by Waldow and Wolf (1997). Wakeham and White (1996) were able to detect resting spores in soil using indirect ELISA or immunofluorescence, with a detection level of 102 spores per g of soil. However, it was found that no serological kit was commercially available at present.

3.4.2 Rhizoctonia solani

The water agar platings of moist sand incubated seed material demonstrated that the pathogen survived this treatment without problems. Incubated samples were also used in biotests in which a sand(3):fine(1):medium(1) vermiculite mixture was used as growth medium (data not presented), and disease development was noted in all pots. However, the growth medium was found unsuited, resulting in highly variable plant emergence, and for that reason no detailed disease scoring was made.

Both in the preliminary and the soil dilution tests it was demonstrated that the pathogen was in high vigour and that the test method was highly sensitive, since even at 0.3 g inoculum per pot a high disease incidence was scored. The 0.3 g inoculum corresponds to 2-4 R. solani colonized wheat seeds, which shows that 2 to 4 inoculum point sources in a pot are sufficient for disease development after three weeks of incubation.

It was verified that the Neogen ELISA kit can be used for identifying R. solani infections in the biotest. Unfortunately the first approach to evaluating whether the ELISA procedure may have a quantitation potential in the present context was unsuccessful, and further, repetitive studies, designed to evaluate this are required, in any event, in order to obtain any safe information on this aspect.

3.4.3 Fusarium oxysporum

As for P. brassicae quite a few research workers have reported serological detection of F. oxysporum by the ELISA method (e.g. Eparvier and Alabouvette, 1994), but no ELISA kit was found to be commercially available.

3.4.4 Tobacco mosaic virus

The tobacco mosaic virus in all three samples incubated in sand clearly survived in amounts that could very easily be detected by the biotests employed. Both tobacco varieties used produced clearly visible symptoms and both reacted strongly positively by ELISA. For the full-scale investigation, use of N. tabacum var. Xanthi-nc alone as test plants should therefore be quite sufficient.

A few of the inoculated leaves showed severe damage (being almost or completely dead) at the time of scoring. This was almost certainly because these leaves had been two young at the time of inoculation. Somewhat older plants should therefore be used for the bioassay, i.e. plants at the 6-8 leaf stage.

3.5 Recommendations for the full-scale investigation

3.5.1 Plasmodiophora brassicae

Since the biotest method as applied here worked well, there are no obvious reasons to modify procedures for the full-scale investigation.

3.5.2 Rhizoctonia solani

Since the most severe disease development was seen in the high temperature regime, this should be used for incubation in the full-scale investigation. The clay-peat growth medium or the sand-clay-peat mixture is suitable for the test. The sowing density should be reduced to 12 seeds per pot.

3.5.3 Fusarium oxysporum

The clay-peat mixture should replace the sand-vermiculite mixture in order to obtain a lower pH-value, which is reported to favour disease development. Bigger pots (2-L) and larger substrate volumes should be used, and the sowing density be reduced to 12 plants per pot, considering the long duration of the test. The temperature regime should be the highest applied in the pilot investigations (25-28?C). Fertiliser should be applied sparingly, and application should be reduced to zero when indications of the first symptoms are recorded. N should be applied as ammonium, not as nitrate, all in order to favour disease development as much as possible and reduce test duration.

3.5.4 Tobacco mosaic virus

It is recommended to use two Nicotiana tabacum var. Xanthi-nc plants for each sample to be tested, inoculating two leaves per plant. The plants have to be at the 6-8 leaf stage for bioassay evaluated by ELISA and counting local lesions.

4. References

Bioabfallverordnung (BioAbfV), 1998. Ordinance of 21st September, 1998 on the utilisation of bio-wastes on land used for agricultural, silvicultural and horticultural purposes. Germany.

Christensen, K.K., Kron, E., & Carlsbæk, M., 2000. Sanitary aspects of composting biodegradable waste – Towards a Nordic evaluation model. TemaNord 2000:512. Nordic Counsel of Ministers, Copenhagen, Denmark.

Clark, M.F., & Adams, A.N., 1977. Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. Journal of General Virology 34: 475-483.

DS 2401, 1999. Danish Standards Association (Dansk Standardiseringsråd). Environmental quality – Enumeration of enterococci – Colony count on solid medium – Spread plate method. Copenhagen, Denmark (in Danish).

Eparvier, A. & Alabouvette, C., 1994. Use of ELISA and GUS-transformed strains to study competition between pathogenic and non-pathogenic Fusarium oxysporum for root colonization. Biocontrol Science and Technology, 4: 35-47.

Kehles, B. & Pohle, A. (eds.), 1998. Methodenbuch zur Analyse von Kompost, Kompost-Information 222, 4th ed. Bundesgütegemeinschaft Kompost e.V. Stuttgart, Germany. 154 pp (in German).

NMKL no. 68, 2nd ed., 1992. Nordic committee on food analysis. Enterococcus. Determination in foods. UCD 576.851.21.

NMKL no. 91, 2nd ed., 1988. Nordic committee on food analysis. Pretreatment of foods for microbiological examination. UCD 576.8.08:614.31.

NMKL no. 125, 3rd ed., 1996. Nordic committee on food analysis. Thermotolerant coliform bacteria. Enumeration in foods. UCD 576.851.48.

NMKL no. 147, 1993. Nordic committee on food analysis. Coliform bacteria and Escherichia coli in foods. Determination by the plate count method with PetrifilmÔ plates. UCD 579.67:579.84:579.083.

Wakeham, A.J. & White, J.G., 1996. Serological detection in soil of Plasmodiophora brassicae resting spores. Physiological and Molecular Plant Pathology, 48: 289-303.

Waldow, F. & Wolf, G. A., 1997. Survival ability of phytopathogens in biowaste composting: Proof of the causal agent of clubroot disease Plasmodiophora brassicae using serological methods. In Organic Recovery & Biological Treatment into the next Millenium. International Conference, Harrogate, U.K. 3-5 September 1997 (ed.: E. I. Stentiford). p. 338-340.